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References Aagard, K., D. Darby, K. Falkner, G. Flato, J. Grebmeier, C. Measures, and J. Walsh. 1999. Marine Science in the Arctic: A Strategy. Fairbanks, AK: Arctic Research Consortium of the United States (ARGUS). 84 pp. Aakra, A., J.B. Utaker, and I.F. Nes. 1999. RFLP of rRNA genes and sequencing of the 16S- 23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach. International Journal of Systematic Bacteriology 49:123-130. Aghajari, N., G. Feller, C., Gerday, and R. Haser. 1998. Structures of the psychrophilic Alteromonas haloplanctis alpha-amylase give insights into cold adaptation at a molecu- lar level. Structure 6:1503-1516. Aguilar, P.S., A.M. Hernandez-Arriaga, L.E. Cybulski, A.C. Erazo, and D. Mendoza. 2001. Molecular basis of thermosensing: a two-component signal transduction thermometer in Bacillus subtilis. EMBO Journal 20:1681-1691. Aislabie, J., J. Foght, and D. Saul. 2000. Aromatic hydrocarbon-degrading bacteria from soil near Scott Base, Antarctica. Polar Biology 23:183-188. Alley, R.B., and R.A. Bindschadler, (eds.~. 2001. The West Antarctic Ice Sheet: Behavior and Environment. Washington, DC: American Geophysical Union. Alley, R.B., C.A. Shuman, D.A. Meese, A.J. Gow., K.C. Taylor, K.M. Cuffey, J.J. Fitzpatrick, P.M. Grootes, G.A. Zielinski, M. Ram, G. Spinelli, and B. Elder. 1997. Visual- stratigraphic dating of the GISP2 ice core: Basis, reproducibility, and application. Journal of Geophysical Research 102(C12~:367-388. Anderson, J.G., D.W. Toohey, and W.H. Brune. 1991. Free radicals within the Antarctic vortex: The role of CFCs in Antarctic ozone loss. Science 251:3946. Aparicio, S., J. Chapman, E. Stupka, N. Putnam, J.-M. Chia, P. Dehal, A. Christoffels, S. Rash, S. Hoon, A. Smit, M.D. Sollewijn Gelpke, J. Roach, T. Oh, I.Y. Ho, M. Wong, C. Detter, F. Verhoef, P. Predki, A. Tay, S. Lucas, P. Richardson, S.F. Smith, M.S. Clark, Y.J.K. Edwards, N. Doggett, A. Zharkikh, S.V. Tavtigian, D. Pruss, M. Barnstead, C. Evans, H. Baden, J. Powell, G. Glusman, L. Rowen, L. Hood, Y.H. Tan, G. Elgar, T. Hawkins, B. Venkatesh, D. Rokhsar, S. Brenner. 2002. Whole-genome shotgun assem- bly and analysis of the genome of Fugu rubripes. Science 297:1301-1310. 133

134 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Arrigo, K.R., G.R. DiTullio, R.B. Dunbar, D.H. Robinson, M. Van Woert, D.L. Worthen, and M.P. Lizotte. 2000. Phytoplankton taxonomic variability in nutrient utilization and primary production in the Ross Sea. Journal of Geophysical Research 105:8827-8846. Azam, F.1998. Microbial control of oceanic carbon flux: The plot thickens. Science 280:694-696. Bae, W.H., B. Xia, M. Inouye, and K. Severinov. 2000. Escherichia cold CspA-family RNA chaperones are transcriptional antiterminators. Proceedings of the National Academy of Science USA 97:7784-7789. Baker, C.S., G.M. Lento, F. Cipriano, M.L. Dalebout, and S.R. Palumbi. 2000a. Scientific whaling: Source of illegal products for market? Science 290:1695-1696. Baker, C.S., G.M. Lento, F. Cipriano, and S.R. Palumbi. 2000b. Predicted decline of pro- tected whales based on molecular genetic monitoring of Japanese and Korean markets. Proceedings of the Royal Society of London B 267:1191-1199. Bakermans, C., and E.L. Madsen. 2002. Detection in coal tar waste-contaminated ground- water of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification. Journal of Microbiological Methods 50:75-84. Bano, N., and J.T. Hollibaugh. 2000. Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the p-subdivision of the class Proteobacteria in the Arctic Ocean. Applied and Environmental Microbiology 66:1960-1969. Bano, N., and J.T. Hollibaugh. 2002. Phylogenetic composition of bacterioplankton assem- blages from the Arctic Ocean. Applied and Environmental Microbiology 68:505-518. Bargelloni, L., P.A. Ritchie, T. Patarnello, B. Battaglia, D.M. Lambert, and A. Meyer. 1994. Molecular evolution at subzero temperatures: Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei), and the evolution of antifreeze glycopeptides. Molecular Biology and Evolution 11:854-863. Barnes, B.M.1989. Freeze avoidance in mammals: Body temperatures below 0°C in an arctic hibernator. Science 244:1593-1595. Barrett, P.J., D.P. Elston, D.M. Harwood, B.C. McKelvey, and P.-N. Webb. 1987. Mid- Cenozoic record of glaciation and sea-level change on the margin of Victoria Land basin, Antarctica. Geology 15:634-637. Becker, L.B., M.L. Weisfeldt, M.H. Weil, T. Budinger, J. Carrico, K. Kern, G. Nichol, I. Shechter, R. Traystman, C. Webb, H. Wiedemann, R. Wise, and G. Sopko. 2002. The PULSE initiative: Scientific priorities and strategic planning for resuscitation research and life saving therapies. Circulation 105:2562-2570. Beja, O., L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L.P. Nguyen, S. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, and E.F. DeLong. 2000. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289:1902-1906. Beja, O., E.N. Spudich, J.L. Spudich, M. Leclerc, and E.F. DeLong. 2001. Proteorhodopsin phototrophy in the ocean. Nature 411:786-789. Beja, O., E.V. Koonin, L. Aravind, L.T. Taylor, H. Seitz, J.L. Stein, D.C. Bensen, R.A. Feldman, R.V. Swanson, and E.F. DeLong. 2002a. Comparative genomic analysis of Archaeal genotypic variants in a single population and in two different oceanic provinces. Applied and Environmental Microbiology 68:335-345. Beja, O., M.T. Suzuki, J.F. Heidelberg, W.C. Nelson, C.M. Preston, T. Hamada, J.A. Eisen, C.M. Fraser, and E.F. DeLong. 2002b. Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415:630-633. Behrenfeld, M.J., A.J. Bale, Z.S. Kolber, J. Aiken, and P.G. Falkowski. 1996. Confirmation of iron limitation of phytoplankton photosynthesis in the equatorial Pacific Ocean. Nature 383:508-511.

REFERENCES 135 Benjamin, D.C., S. Kristjansdottir, and A. Gudmundsdottir. 2001. Increasing the thermal stability of euphauserase, a cold-active and multifunctional serine protease from Antarctic krill. European Journal of Biochemistry 268:127-131. Bentahir, M., G. Feller, M. Aittaleb, J. Lamotte-Brasseur, T. Himri, J. P. Chessa, and C. Gerday. 2000. Structural, kinetic, and calorimetric characterization of the cold-active phosphoglycerate kinase from the Antarctic Pseudomonas sp. TACII18. Journal of Bio- logical Chemistry 275:11147-11153. Bergstrom, D.M., and S.L. Chown. 1999. Life at the front: history, ecology and change on Southern Ocean islands. Trends in Ecology and Evolution 14:472477. Berkman, P.A., and L.R. Tipton-Everett (eds.~. 2001. Latitudinal Ecosystem (LAT-ECO) Responses to Climate Across Victoria Land, Antarctica. Report of a NSF workshop, BPRC Report No. 20. Columbus: Byrd Polar Research Center, Ohio State University Press. 152 pp. Billings, W.D, LO. Luken, D.A. Mortensen, and K.M. Peterson. 1982. Arctic tundra: A sink or source for atmospheric carbon dioxide in a changing environment? Oecologia 53:7-11. Blank, C.E., S.L. Cady, and N.R. Pace. 2002. Microbial composition of near-boiling silica- depositing thermal springs throughout Yellowstone National Park. Applied and Envi- ronmental Microbiology 68:5123-5135. Boetius, A., K. Ravenschlag, C.J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B.B. J0rgensen, U. Witte, and O. Pfannkuche. 2000. A marine microbial consortium appar- ently mediating anaerobic oxidation of methane. Nature 407:623-626. Borneman, J. 1999. Culture-independent identification of microorganisms that respond to specified stimuli. Applied and Environmental Microbiology 65:3398-3400. Boschker, H.T.S., S.C. Nold, P. Wellsbury, D. Bos, W. de Graaf, R. Pel, R.J. Parkes, and T.E. Cappenberg. 1998. Direct linking of microbial populations to specific biogeochemical processes by C-13 labelling of biomarkers. Nature 392:801-805. Both, C., and M.E. Visser. 2001. Adjustment to climate change is constrained by arrival date in a long-distance migrant bird. Nature 411:296-298. Bowman, J.P., J.J. Gosink, S.A. McCammon, T.E. Lewis, D.S. Nichols, P.D. Nichols, J.H. Skerratt, J.T. Staley, and T.A. McMeekin. 1998. Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: Psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6~3~. International Journal of Systematic Bacteriology 48:1171-1180. Boyd, P.W., A.J. Watson, C.S. Law, E.R. Abraham, T. Trull, R. Murdoch, D.C.E. Bakker, A.R. Bowie, K.O. Buesseler, H. Chang, M. Charette, P. Croot, K. Downing, R. Frew, M. Gall, M. Hadfield, J. Hall, M. Harvey, G. Jameson, J. Laroche, M. Liddicoat, R. Ling, M.T. Maldonado, R.M. McKay, S. Nodder, S. Pickmere, R. Pridmore, S. Rintoul, K. Safi, P. Sutton, R. Strzepek, K. Tanneberger, S. Turner, A. Waite, and J. Zeldis. 2000. A mesoscale phytoplankton bloom in the polar Southern Ocean stimulated by iron fer- tilization. Nature 407:695-702. Boyer, B.B., and B.M. Barnes. 1999. Molecular and metabolic aspects of mammalian hiber- nation. Bioscience 49:713-724. Boynton, W.V., W.C. Feldman, S.W. Squyres, T.H. Prettyman, J. Bruckner, L.G. Evans, R.C. Reedy, R. Starr, J.R. Arnold, D.M. Drake, P.A.J. Englert, A.E. Metzger, I. Mitrofanov, J.I. Trombka, C. d'Uston, H. Wanke, O. Gasnault, D.K. Hamara, D.M. Janes, R.L. Marcialis, S. Maurice, I. Mikheeva, G.J. Taylor, R. Tokar, and C. Shinohara. 2002. Dis- tribution of hydrogen in the near surface of Mars: Evidence for subsurface ice depos- its. Science 297:81-85.

136 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Braddock, J.F, M.L. Ruth, P.H. Catterall, J.L. Walworth, and K.A. Mccarthy. 1997. Enhance- ment and inhibition of microbial activity in hydrocarbon-contaminated arctic soils: Implications for nutrient-amended bioremediation. Environmental Science and Technol- ogy 31:2078-2084. Brinton, K.L.F., A.I. Tsapin, D. Gilichinsky, and G. D. McDonald. 2002 . Aspartic acid racemiza- tion and age-depth relationships for organic carbon in Siberian permafrost. Astrobiology 2:77-82. Britten, R.J. 2002. Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels. Proceedings of the National Academy of Sciences USA 99:13633- 13635. Broughton, L.C. 2002. Understanding the role of soil microbial comunity in the Arctic tundra. P. 21 in Moran, M.A., and S.L. Cadee (eds.), Microbial Observatories/LexEn Prin- cipal Investigators Workshop. Arlington, Virginia: National Science Foundation. Brown, J., K.R. Everett, P.J. Webber, S.F. MacLean, Jr., and D.F. Murray. 1980. The coastal tundra at Barrow. Pp. 1-29 in J. Brown, P.C. Miller, L.L. Tieszen and F.L. Bunnell (eds.~. An Arctic Ecosystem: The Coastal Tundra at Barrow, Alaska. Stroudsburg, Penn.: Dowden Hutchinson, & Ross. 571 pp. Browne, J., A. Tunnacliffe, and A. Burnell. 2002. Plant desiccation gene found in a nema- tode. Nature 416:38. Bull, I.D., N.P. Parekh, G.H. Hall, P. Ineson, and R.P. Evershed. 2000. Detection and classification of atmospheric methane oxidizing bacteria in soil. Nature 405:175-178. Buma, A.G.J., M.K. De Boer, and P. Boelen. 2001. Depth distributions of DNA damage in antarctic marine phyto- and bacterioplankton exposed to summertime UV radiation. Journal of Phycology 37:200-208. Bunnell, F.L., D.E.N. Tait, P.W. Flanagan, and K. van Cleve. 1977. Microbial respiration and substrate weight loss. I. A general model of abiotic variables. Soil Biology and Biochemis- try 9:3340. Calkins, J., and T. Thordardottir. 1980. The ecological significance of solar UV radiation on aquatic organisms. Nature 283:563-566. Carpenter E.J., S. Kin, and D.G. Capone. 2000. Bacterial activity in South Pole snow. Appliedand Environmental Microbiology 66:4514-4517. Castello, J.D., S.O. Rogers, W.T. Starmer, C.M. Catranis, L. Ma, G.D. Bachand, Y. Zhao, and J.E. Smith. 1999. Detection of tomato mosaic tobamovirus RNA in ancient glacial ice. Polar Biology 22:207-212. Causton, H.C., B. Ren, S.S. Koh, C.T. Harbison, E. Kanin, E.G. Jennings, T.I. Lee, H.L. True, E.S. Lander, and R.A. Young. 2001. Remodeling of yeast genome expression in response to environmental changes. Molecular and Cell Biology 12:323-337. Chapin, F.S., and G.R. Shaver. 1985. Individualistic growth response of tundra plant species to environmental manipulations in the field. Ecology 66:564-576. Chen, T.H.H., and N. Murata. 2002. Enhancement of tolerance of aboitic stress by metabolic engineering of betaines and other compatible solutes. Current Opinion in Biology 5:250- 257. Chen, L., A.L. DeVries, and C.-H.C. Cheng. 1997a. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. Proceedings of the National Academy of Sciences USA 94:3811-3816. Chen, L., A.L. DeVries, and C.-H.C. Cheng. 1997b. Convergent evolution of antifreeze glycoproteins in Antarctic nototheniid fish and Arctic cod. Proceedings of the National Academy of Sciences USA 94:3817-3822. Chen, W.-J., C. Bonillo, and G. Lecointre. 1998. Phylogeny of the Channichthyidae (Notothenioidei, Teleostei) based on two mitochondrial genes. Pp. 287-298 in G. di Prisco, E. Pisano, E. and A. Clarke (eds.), Fishes of Antarctica. Milano: Springer-Verlag.

REFERENCES 137 Chibber, B.A.K., P. Fay, G.H. Bernstein, F.J. Castellino, and J.G. Duman. 2002. Remote multisensing of biological systems. Pp. 883-887 in A.K. Hyder. et al., (eds.), Multisensor Fusion. Amsterdam: Kluwer Academic Publishers. Christner, B.C., E. Mosley-Thompson, L.G. Thompson, and J.N. Reeve. 2001. Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice. Environmental Microbiology 3:570-577. Chun, J., A. Huq, and R.R. Colwell. 1999. Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus. Applied and Environmental Microbiology 65:2202-2208. Chyba, C.F. 2000. Energy for microbial life on Europa. Nature 403:381-382. Chyba, C.F., and K.P. Hand. 2001. Life without photosynthesis. Science 292:2026-2027. Chyba, C.F., and C.B. Phillips. 2001. Possible ecosystems and the search for life on Europa. Proceedings of the National Academy of Sciences USA 98:801-804. Cipriano, F., and S.R. Palumbi. 1999. Genetic tracking of a protected whale. Nature 397:307- 308. Clark, P. U., R.B. Alley, and D. Pollard. 1999. Northern hemisphere ice-sheet influences on global climate change. Science 286:1104-1111. Clarke, A. 1990. Temperature and evolution: Southern Ocean cooling and the Antarctic marine fauna. Pp. 9-22 in K.R. Kerry, and G. Hempel (eds.), Antarctic Ecosystems: Ecological Change and Conservation. Springer-Verlag, Berlin and Heidelberg. Clarke, A. 1991. What is cold adaptation and how should we measure it? American Zoologist 31 :81-92. Clarke, A., and I.A. Johnston. 1996. Evolution and adaptive radiation of Antarctic fishes. Trends in Ecology and Evolution 11 :212-218. Clifford, S.M., D. Crisp, D.A. Fisher, K.E. Herkenhoff, S.E. Smrekar, P.C. Thomas, D.D. Wynn-Williams, R.W. Zurek, J.R. Barnes, B.G. Bills, E.W. Blake, W.M. Calvin, J.M. Cameron, M.H. Carr, P.R. Christensen, B.C. Clark, G.D. Clow, J.A. Cutts, et al. 2000. The state and future of Mars polar science and exploration. Icarus 144:210-242. Clow, G.D., and B. Koci. 2002. A fast mechanical-access drill for polar glaciology, paleo- climatology, geology, tectonics, and biology. National Institute for Polar Research Special Issue 56:1-30. Cocca, E., M. Ratnayake-Lecamwasam, S.K. Parker, L. Camardella, M. Ciaramella, M., G. di Prisco, and H.W. Detrich, III. 1995. Genomic remnants of oc-globin genes in the hemoglobinless Antarctic icefishes. Proceedings in the National Academy of Sciences USA 92:1817-1821. Connon, S.A., and S.T. Giovannoni. 2002. High throughput methods for culturing microor- ganisms in very low nutrient media yield diverse new marine isolates. Applied and Environmental Microbiology 68~8~:3878-85. Cottrell, M.T., and D.L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular- weight dissolved organic matter. Applied and Environmental Microbiology 66:1692-1697. Courtright, E.M., D.H. Wall, R.A. Virginia, J.T. Vida, L.M. Frisse, and W.K. Thomas. 2000. Nuclear and mitochondrial DNA sequence diversity in the Antarctic nematode Scottnema lindsayue. Journal of Nematology 32:143-153. Crawford, M. 1987. Landmark ozone treaty negotiated. Science 237:1557. Crockett, E.L., and B.D. Sidell. 1990. Some pathways of energy metabolism are cold adapted in Antarctic fishes. Physiological Zoology 63:472488. Cullen, J.J., and M.P. Lesser. 1991. Inhibition of photosynthesis by ultraviolet radiation as a function of dose and dosage rate: Results for a marine diatom. Marine Biology 111:183- 190.

138 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Cummings, C.J., and H.Y. Zoghbi. 2000. Fourteen and counting: Unraveling trinucleotide repeat diseases. Human Molecular Genetics 9:909-916. D'Amico, S., C. Gerday, and G. Feller. 2000. Structural similarities and evolutionary rela- tionships in chloride-dependent oc-amylases. Gene 253:95-105. Darling, K.F., C.M. Wade, I.A. Stewart, D. Kroon, R. Dingle, and A.J. Brown. 2000. Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of plank- tonic foraminifera. Nature 405:4347. Davail, S., G. Feller, E. Narinx, and C. Gerday. 1994. Cold adaptation of proteins: Purifica- tion, characterization, and sequence of the heat-labile subtilisin from the Antarctic psychrophile Bacillus TA41. Journal of Biological Chemistry 269:17448-17453. Davidson, A.T., H.J. Marchant, and W.K. de la Mare. 1996. Natural UVB exposure changes the species composition of Antarctic phytoplankton in mixed cultures. Aquatic Micro- bial Ecology 10:299-305. Day, T.A., and P.J. Neale. 2002. Effects of UV-B radiation on terrestrial and aquatic primary producers. Annual Review of Eccological Systems 33:371-396. de Baar, H.J.W., J.T.M. de Jong, D.C.E. Bakker, B.M. Loscher, C. Veth, U. Bathmann, and V. Smetacek. 1995. Importance of iron for phytoplankton spring blooms and CO2 draw- down in the Southern Ocean. Nature 373:412-415. DeConto, R.M., and D. Pollard. 2003. Rapid Cenozoic glaciation of Antarctica triggered by declining atmospheric CO2. Nature 421:245-249. Delong, E.F., K.Y. Wu, B.B. Prezelin, and R.V.M. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697. Delong, E.F., D.G. Franks, and A.A. Yayanos. 1997. Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria. Applied and Environmental Microbiology 63:2105-2108. Deloukas, P., G. D. Schuler, G. Gyapay, E. M. Beasley, C. Soderlund, P. Rodriguez-Tome, L. Hui, T.C. Matise, K.B. McKusick, J.S. Beckmann, S. Bentolila, M.-T. Bihoreau, B.B. Birren, J. Browne, A. Butler, A.B. Castle, N. Chiannilkulchai, C. Clee, P., J.R. Day, A. Dehejia, T. Dibling, N. Drouot, S. Duprat, C. Fizames, et al. 1998. A physical map of 30,000 human genes. Science 282:744-746. Deming, J.W. 2002. Psychrophiles and polar regions. Current opinion. Microbiology 3~5~:301-309. de Mora, S., S. Demers, and M. Vernet (eds.~. 2000. The Effects of UV Radiation in the Marine Environment. Cambridge University Press, UK. Denton, G.H., and B.L. Hall. 2000. Glacial and paleoclimatic history of the Ross ice drainage system of Antarctica: Preface. Geografiska Annaler 82A:139-141. DeWitt, H.H. 1971. Coastal and deep-water benthic fishes of the Antarctic. Pp. 1-10 in V.C. Bushnell (ed.), Antarctic Map Folio Series, Folio 15. New York: American Geographical Society. Diamond, J. 2001. Damned experiments! Science 294:1847-1848. DiTullio, G.R., J.M. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M.L. Vanwoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature 404:595-598. Doran, P.T. J.C. Priscu, W. Berry Lyons, J.E. Walsh, A.G. Fountain, D.M. McKnight, D.L. Moorhead, R.A. Virginia, D.H. Wall, G.D. Clow, C.H. Fritsen, C.P. McKay, and A.N. Parsons. 2002. Antarctic climate cooling and terrestrial ecosystem response. Nature 415:517-520. Duman, J.G. 2001. Antifreeze and ice nucleator proteins in terrestrial arthropods. Annual Review of Physiology. 63:327-357. Eastman, J.T. 1991. Evolution and diversification of Antarctic notothenioid fishes. Ameri- can Zoologist 31:93-109.

REFERENCES 139 Eastman, J.T. 1993. Antarctic Fish Biology: Evolution in a Unique Environment. Academic Press, San Diego. Eastman, J.T. 1999. Aspects of the biology of the icefish Dacodraco hunteri (Notothenioidei, Channichthyidae) in the Ross Sea, Antarctica. Polar Biology 21:194-196. Eastman, J.T. 2000. Antarctic notothenioid fishes as subjects for research in evolutionary biology. Antarctic Science 12:276-287. Eastman, J.T., and A.R. McCune. 2000. Fishes on the Antarctic continental shelf: Evolution of a marine species flock? Journal of Fish Biology 57A:84-102. Emanuel, B.S., and T.H. Shaikh. 2001. Segmental duplications: An "expanding" role in genomic instability and disease. Nature Review Genetics 2:791-800. Estell, D.A. 1988. Modified enzymes and methods for making same. U.S. Patent 4760025. Falkowski, P.G., and K. Kolber, 1993 Estimation of phytoplankton photosynthesis by active fluorescence. International Consortium on the Exploration of the Seas Symposium 197:92-103. Fell, D.A. 2001. Beyond genomics. Trends in Genetics 17:680-683. Feller, G., and C. Gerday. 1997. Psychrophilic enzymes: Molecular basis of cold adapta- tion. Cellular and Molecular Life Sciences 53:830-841. Feller, G., M. Thiry, J.L. Arpigny, and C. Gerday. 1991. Cloning and expression in Escheri- chia cold of three lipase-encoding genes from the psychrotrophic Antarctic strain Moraxella TA144. Gene 102:111-115. Felsenstein, J. 1989. PHYLIP: Phylogeny inference package, Version 3.2. Cladistics 5:164-166. Ferrari, V.C., and J.T. Hollibaugh. 1999. Distribution of microbial assemblages in the central Arctic Ocean basin studied by PCR/DGGE: Analysis of a large data set. Hydrobiologia 401:55-68. Fiehn, O. 2001. Combining genomics, metabolome analysis, and biochemical modeling to understand metabolic networks. Comparative and Functional Genomics 2:155-168. Fields, P.A., and G.N. Somero. 1998. Hot spots in cold adaptation: Localized increases in conformational flexibility in lactate dehydrogenase A4 orthologs of Antarctic notothenioid fishes. Proceedings of the National Academy of Sciences USA 95:11,476- 11,481. Fletcher, G.L., C.L. Hew, and P.L. Davies. 2001. Antifreeze proteins of teleost fishes. Annual Review of Physiology 63:488493. Francis, J.E. 1999. Evidence from fossil plants for Antarctic paleoclimates over the past 100 million years. Terra Antarctica Reports 3:43-52. Frati, F., and E. Dell'Ampio. 2000. Molecular phylogeny of three subfamilies of the Neanuridae (Insecta, Collembola) and the position of the Antarctic species Friesea grisea Schaffer. Pedobiologia 44:342-360. Frati, F., P.P. Fanciulli, A. Carapelli, E. Dell'Ampio, F. Nardi, G. Spinsanti, and R. Dallai. 2000. DNA sequence analysis to study the evolution of Antarctic Collembola. Italian Journal of Zoology 67:133-139. Frati, F., G. Spinsanti, and R. Dallai. 2001. Genetic variation of mtCOII gene sequences in the collembolan Isotoma klovstadi from Victoria Land, Antarctica: Evidence for popu- lation differentiation. Polar Biology V24:934-940. Freckman, D.W., and R.A. Virginia. 1998. Soil biodiversity and community structure in the McMurdo Dry Valleys, Antarctica. Pages 323-335 in J. Priscu (ed.), Ecosystem Dynamics in a Polar Desert: The McMurdo Dry Valleys, Antarctica. Washington, DC: American Geophysical Union. Frederick, J. E. and H. E. Snell.1988. Ultraviolet radiation levels during the Antarctic spring. Science 241:438440. Frederick, J.E., Q. Zheng, and C.R. Booth. 1998. Ultraviolet radiation at sites on the Antarctic coasts. Journal of Photochemistry and Photobiology 38:183-190.

140 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Fritsen, C.H., and J.C. Priscu. 1998. Cyanobacterial assemblages in permanent ice covers of Antarctic lakes: Distribution, growth rate, and temperature response of photosynthesis. Journal of Phycology 34:587-597. Funk, D.E., E.R. Pullman, K.M. Peterson, P. Crill, and W.D. Billings. 1994. The influence of water table on carbon dioxide, carbon monoxide and methane fluxes from taiga bog microcosms. Global Biogeochemical Cycles 8:271-278. Gaidos, E.J., and F. Nimmo. 2000. Tectonics and water on Europa. Nature 405:637. Gaidos, E.J., K.H. Nealson, and J.L. Kirschvink. 1999. Life in ice-covered oceans. Science 284:1631-1633. Gasch, A.P., P.T. Spellman, C.M. Kao, O. Carmel-Harel, M.B. Eisen, G. Stgorz, D. Botstein, and P.O. Brown. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Molecular Biology of the Cell 11~12~:42414257. Gast, R.J., D.A. Caron, D.M. Moran, J.M. Rose, M.R. Dennett, R.A. Schaffner, and D.J. Patterson. 2002. Protistan molecular ecology and physiology in Antarctic waters. P. 34 in Moran, M.A., and S.L. Cadee (eds.), Microbial Observatories/LexEn Principal Investigator's Workshop. Arlington, Virginia: National Science Foundation. GenomeWeb Staff. 2002. NHGRI gives GenomeVision $1.6M to make gene sequencing cheaper. GenomeWeb, 8 October 2002. Available at <http://www.genomeweb.com>. Accessed November 4, 2003. Georlette, D., Z.O. Jonsson, F. Van Petegem, J. Chessa, J. Van Beeumen, U. Hubscher, and C. Gerday. 2000. A DNA ligase from the psychrophile Pseudoalteromonas haloplanEtis gives insights into the adaptation of proteins to low temperatures. European Journal of Biochemistry 267:3502-3512. Gerday, C., M. Aittaleb, J.L. Arpigny, E. Baise, J.P. Chessa, G. Garsoux, I. Petrescu, and G. Feller. 1997. Psychrophilic enzymes: A thermodynamic challenge. Biochimica et Biophysica Acta 1342:119-131. Gerday, C., M. Aittaleb, M. Bentahir, J.P. Chessa, P. Claverie, T. Collins, S. D'Amico, J. Dumont, G. Garsoux, D. Georlette, A. Hoyoux, T. Lonhienne, M.A. Meuwis, and G. Feller. 2000. Cold-adapted enzymes: From fundamentals to biotechnology. Trends in Biotechnology 18:103-107. Gibson, G., and S.V. Muse. 2002. A Primer of Genome Science. Sunderland, Massachusetts: Sinauer Associates. 347 pp. Gilbert, N., S. Lutz-Prigge, and J.V. Moran. 2002. Genomic deletions created upon LINE-1 retrotransposition. Cell 110:315-325. Gilichinsky, D., E. Vorobyova, L. Erokhina, and D. Fyodorov-Davydov. 1992. Long-term preservation of microbial ecosystems in permafrost. Advances in Space Research 12:255- 263. Gilmour, S.J., A.M. Sebolt, M.P. Salazar, J.D. Everard, and M.F. Thomashow. 2000. Over- expression of the Arabidopsis CBF3 transcriptional activator mimics multiple bio- chemical changes associated with cold acclimation. Plant Physiology 124:1854-1865. Gleitz, M., M.R. Vonderloeff, D.N. Thomas, G.S. Dieckmann, and F.J. Millero. 1995. Com- parison of summer and winter inorganic carbon, oxygen and nutrient concentrations in Antarctic see-ice brine. Marine Chemistry 51:81-91. Gon, O., and P.C. Heemstra (eds.~. 1990. Fishes of the Southern Ocean. J.L.B. Smith Institute of Ichthyology, Grahamstown, South Africa. Gosink, J.J., R.L. Irgens, and J.T. Staley. 1993. Vertical distribution of bacteria in sea ice. FEMS Microbiology Ecology 102:85-90. Gosink, J.J., R.P. Herwig, and J.T. Staley. 1997. Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., non-pigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Systematic and Applied Microbiology 20:356-365.

REFERENCES 141 Gracey, A.Y., J.V. Troll, and G.N. Somero. 2001. Hypoxia-induced gene expression profil- ing in the euryoxic fish Gillichthys mirabilis. Proceedings of the National Academy of Sciences USA 98:1993-1998. Gray, N.D., R. Howarth, R.W. Pickup, J.G. Jones, and I.M. Head. 2000. Use of combined microautoradiography and fluorescence in situ hybridization to determine carbon metabolism in mixed natural communities of uncultured bacteria from the genus Achromatium. Applied and Environmental Microbiology 66:45184522. Greenberg, R., P. Geissler, B.R. Tufts, and G.V. Hoppa. 2000. Habitability of Europa's crust: The role of tidal-tectonic processes. Journal of Geophysical Research 105:17,551- 17,562. Grellmann, D. 2002. Plant responses to fertilization and exclusion of grazers on an arctic tundra heath. OIKOS 98:190-204. GRIP (Greenland Ice-core Project) Members. 1993. Climate instability during the last inter- glacial period recorded in the GRIP ice core. Nature 364:203-207. Grootes, P.M., M. Stuiver, J.W.C. White, S. Johnsen, and J. Jouzel. 1993. Comparison of oxygen isotope records from the GISP2 and GRIP Greenland ice cores. Nature 366:552- 554. Guschin, D.Y., B.K. Mobarry, D. Proudnikov, D.A. Stahl, B.E. Rittmann, and A.M. Mirzabekov. 1997. Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Applied and Environmental Microbiology 63:2397- 2402. Haake, V., D. Cook, J.L. Riechmann, O. Pineda, M.F. Thomashow, and J.Z. Zhang. 2002. Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiology 130:639-948. Have, P., J. Nielsen, and A. Botner. 1991. The seal death in Danish waters 1988.2. Virologi- cal studies. Acta Veterinaria Scandinavica 32:211-219. Herbert, R.A. 1992. A perspective on the biotechnological potential of extremophiles. Trends in Biotechnology 10:395402. Hewitt, G.M. 2000. The genetic legacy of the Quaternary ice ages. Nature 405:907-913. Higuchi, R., B. Bowman, M. Freiberger, O. Ryder, and A. Wilson. 1984. DNA sequence from the quagga, an extinct member of the horse family. Nature 312:282-84. Hobbie, J.E. 1996. Temperature and plant species control over litter decomposition in Alaskan tundra. Ecological Monograph 66:503-522. Hobbie, J.E. (ed.~. 1980. Limnology of Tundra Ponds: Barrow, Alaska. Stroudsburg, Penn.: Dowden Hutchinson, & Ross. 514 pp. Hochachka, P.W. 1988. Channels and pumps determinants of metabolic cold adaptation strategies. Comparative Biochemistry and Physiology 90B:515-519. Hochachka, P.W., and G.N. Somero. 2002. Biochemical Adaptation: Mechanism and Process in Physiological Evolution. Oxford University Press, New York. 466 pp. Hofmann, D.J. 1996. The 1996 Antarctic ozone hole. Nature 383:129. Hofmann, G.E., and G.N. Somero. 1995. Evidence for protein damage at environmental temperatures: Seasonal changes in levels of ubiquitin conjugates and hsp70 in the intertidal mussel Mytilus trossulus. Journal of Experimental Biology 198:1509-1518. Hofmann, G.E., B.A. Buckley, S. Airaksinen, J.E. Keen, and G.N. Somero. 2000. Heat-shock protein expression is absent in the Antarctic fish Trematomus bernacchii (family Nototheniidae). Journal of Experimental Biology 203:2331-2339. Hofreiter, M., D. Serre, H.N. Poinar, M. Kuck, and S. Paabo. 2001. Ancient DNA. Nature Reviews/Genetics 2:353-359. Hollibaugh, J.T., N. Bano, and H.W. Ducklow. 2002. Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria. Applied and Environmental Microbiology 68:1478-1484.

142 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Hoyoux, A., I. Jennes, P. Dubois, S. Genicot, F. Dubail, J. M. Francois, E. Baise, G. Feller, and C. Gerday. 2001. Cold-adapted p-galactosidase from the Antarctic psychrophile Pseudoalteromonas haloplanEtis. Applied and Environmental Microbiology 67:1529-1535. Hugenholtz, P., B.M. Goebel, and N.R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. Journal of Bacteriology 180~18~:4765-4774. .. Huner, P.A., G. Oquist, and F. Sarhan. 1998. Energy balance and acclimation to light and cold. Trends in Plant Science 3~6~:224-230. Huston, A., and J. Deming. 2002. Relationships between microbial extracellular enzymatic activity and suspended and sinking particulate organic matter: Seasonal transforma- tions in the North Water. Deep-Sea Research Part II-Topical Studies in Oceanography 49:5211-5225. Imai, R., L. Chang, A. Ohta, E.A. Bray, and M. Takagi. 1996. A LEA-class gene of tomato confers salt and freezing tolerance when expressed in Saccharomyces cerevisiae. Gene 170:243-248. Irgens, R.L., I. Suzuki, and J.T. Staley. 1989. Gas vacuolate bacteria obtained from marine waters of Antarctica. Current Microbiology 18:261-265. Isachenko, B. 1912. Some data on permafrost bacteria. Izvestiya SanEt Peterburgskogo Botanicheskogo Sada 12:5-6. Ivanov, A.G., E. Miskiewicz, A.K. Clarke, B.M. Greenburg, and N.P.A. Huner. 2000. Pro- tection of Photosystem II against UV-A and UV-B radiation in the cyanobacterium Plectonema boryanum: The role of growth temperature and growth irradiance. Journal of Photochemistry and Photobiology 72~6~:772. Jaglo-Ottosen, K.R., S.J. Gilmour, D.G. Zarka, O. Schabenberger, and M.F. Thomashow. 1998. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tol- erance. Science 280:104-106. Jain, R., M.C. Rivera, J.E. Moore, and J.A. Lake. 2002. Horizontal gene transfer in microbial genome evolution. Theoretical Population Biology 61:489495. Jeffrey, W.H., P. Aas, M. Maille Lyons, R.B. Coffin, R.J. Pledger, and D.L. Mitchell. 1996. Ambient solar-radiation induced photodamage in marine bacterioplankton. Journal of Photochemistry and Photobiology 64:419427. Jeffrey, W.H., J.P. Kase, and S.W. Wilhelm. 2000. Ultraviolet radiation effects on bacterio- plankton and viruses in marine ecosystems. Pp 206-236 in S.J. De Mora et al. (eds.), Effects Of UV Radiation On Marine Ecosystems. United Kingdom: Cambridge University Press. Jiang, W., Y. Hou, and M. Inouye. 1997. CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. Journal of Biological Chemistry 272:196-202. Johannessen, O.L., E.V. Shalina, and M.W. Miles. 1999. Satellite evidence for an Arctic sea ice cover in transformation. Science 286:1937-1939. Johnsen, S. J., H. B. Clausen, W. Dansgaard, K. Fuhrer, N. Gundestrup, C. U. Hammer, P. Iversen, J. Jouzel, B. Stauffer, and J. F. Steffensen. 1992. Irregular glacial interstadials recorded in a new Greenland ice core. Nature 359:311-313. Jones, A.E., and J.D. Shanklin. 1995. Continued decline of total ozone over Halley, Antarc- tica, since 1985. Nature 376:409-411. Kaeberlin, T., K. Lewis, and S.S. Epstein. 2002. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 296:1127-1129. Karentz, D., and I. Bosch. 2001. Influence of ozone-related increases in ultraviolet radiation on antarctic marine organisms. American Zoologist 41:3-16. Karentz, D., J.E. Cleaver, and D.L. Mitchell. 1991. Cell survival characteristics and molecular responses of Antarctic phytoplankton to ultraviolet-B radiation. Journal of Phycology 27:326-341.

REFERENCES 143 Karl, D.M., D.F. Bird, K. Bjorkman, T. Houlihan, R. Shackelford, and L. Tupas. 1999. Micro- organisms in the accreted ice of Lake Vostok, Antarctica. Science 286:2144-2147. Kasuga, M., Q. Liu, S. Miura, K. Yamaguchi-Shinozaki, and K. Shinozaki. 1999. Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nature Biotechnology 17:287-291. Kawall, H.G., J.J. Torres, B.D. Sidell, and G.N. Somero. 2002. Metabolic cold adaptation in Antarctic fishes: Evidence from enzymatic activities in brain. Marine Biology 140:279- 286. Kazazian, H.H., Jr., and J.L. Goodier. 2002. LINE drive: Retrotransposition and genome instability. Cell 110:277-280. Kennett, J.P. 1977. Cenozoic Evolution of Antarctic glaciation, the circum-Atlantic ocean, and their impact on global paleoceanography. Journal of GeophysicalResearch 82:3843- 3859. Kennett, J.P. 1982. Marine Geology. Chapter 19. Global paleoceanographic evolution: Critical events in ocean history. Englewood Cliffs, NJ: Prentice Hall. Pp. 696-751. Kerr, R.A. 1999. Will the Arctic Ocean lose all its ice? Science 286:1828. Kerry, K.R., and G. Hempel (eds.~. 2002. Antarctic Ecosystems: Ecological Change and Conser- vation. Springer-Verlag, Berlin and Heidelberg. Kivelson, M.G., K.K. Khurana, C.T. Russell, M. Volwerk, R.J. Walker, and C. Zimmer. 2000. Galileo magnetometer measurements: A stronger case for a subsurface ocean at Europa. Science 289:1340-1343. Kolber Z.S., R.T. Barber, K.H. Coale, S.E. Fitzwater, R.M. Greene, K.S. Johnson, S. Lindley, and P.G. Falkowski.1994. Iron limitation of phytoplankton photosynthesis in the equa- torial Pacific Ocean. Nature 371:145-149. Komarkova, V., S. Poncet, and J. Poncet. 1985. Two native Antarctic vascular plants, Deschampsia antarctica and Colobanthus quitensis in the Antarctic Peninsula area. Arctic and Alpine Research 122:108-113. Koonin, E.V., K.S. Makarova, and L. Aravind. 2001. Horizontal gene transfer in prokaryotes: Quantification and classification. Annual Review of Microbiology 55:709-742. Krupnik, I., and D. Jolly, (eds.~. 2002. The Earth is faster now: Indigenous observations of Arctic environmental change. Fairbanks, AK: Arctic Research Consortium of the United States. 384 pp. Kwok, C., R. Critcher, and K. Schmitt. 1999. Construction and characterization of zebrafish whole genome radiation hybrids. Pp. 287-302 in H.W. Detrich III, M. Westerfield, and L.I. Zon (eds.), Methods in Cell Biology, Vol. 60, "The Zebrafish: Genetics and Genomics." San Diego: Academic Press. Lambert, D.M., P.A. Richie, C.D. Millar, B. Holland, A.J. Drummond, and C. Baroni. 2002. Rates of evolution in ancient DNA from Adelie Penguins. Science 295:2270-2273. Lander, E.S., L.M. Linton, B. Birren, C. Nusbaum, M.C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. Fitzhugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. Levine, P. Mcewan, K. Mckernan, J. Meldrim, J.P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, and D. Wyman, et al. 2001. Intitial sequencing and analysis of the human genome. Nature 409:860-921. Lakhman. K. 2002. New Venter center will likely be a boon for overall genome sequencing. GenomeWeb, 16 August 2002. Available at <http://www.genomeweb.com>. Accessed November 3, 2002. Langseth, M., T. Delaca, G. Newton, B. Coakley, R. Colony, J. Gossett, et al.1993. SCICEX 93 Arctic Cruise of the United States Navy, nuclear-powered submarine, USS Pargo. Marine Technology Society Journal 27:4-12.

44 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Lau, D.T., A. Saeed-Kothe, S.K. Parker, and H.W. Detrich III. 2001. Adaptive evolution of gene expression in Antarctic fishes: Divergent transcription of the 5'-to-5' linked adult ocl- and p-globin genes of the Antarctic teleost Notothenia coriiceps is controlled by dual promoters and intergenic enhancers. American Zoologist 41:113-132. Lawver, L.A., L.M. Gahagan, and M.F. Coffin. 1992. The development of paleoseaways around Antarctica. Pp. 7-30 in Kennett, J.P. and D.A. Warnke teds.), The Antarctic Paleoenvironment: A Perspective on Global Change. Antarctic Research Series Volume 56. Washington, DC: American Geophysical Union. Lee, N. P.H. Nielsen, K.H. Andreasen, S. Juretschko, J.L. Nielsen, K.H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microauto- radiography a new tool for structure-function analyses in microbial ecology. Applied and Environmental Microbiology 65:1289-1297. Leonard, J.A., R.K. Wayne, and A. Cooper. 2000. Population genetics of Ice Age brown bears. Proceedings of the National Academy of Sciences USA 97:1651-1654. Lesser, M.P., J.J. Cullen, and P.J. Neale. 1994. Carbon uptake in a marine diatom during acute exposure to ultraviolet B radiation: Relative importance of damage and repair. Journal of Phycology 30:183-192. Levi, B.G. 1998. Adrift on the ice pack, researchers explore changes in the Arctic environ- ment. Physics Today 51:17-19. Lewis-Smith, R.I. 1996. Introduced plants in Antarctica: Potential impacts and conserva- tion issues. Biological Conservation 76:135-146. Lindahl, T. 1993. Instability and decay of the primary structure of DNA. Nature 362:709- 715. Litchman, E., P.J. Neale, and A.T. Banaszak. 2002. Increased sensitivity to ultraviolet radia- tion in nitrogen-limited dinoflagellates: Photoprotection and repair. Limnology and Oceanography 47:86-94. Littlepage, J.L. 1965. Oceanographic investigation in McMurdo Sound, Antarctica. Pp. 1-37 in Llano, G.A. (ed.), Biology of the Antarctic Seas. Volume II. Washington, DC: American Geophysical Union. Liu, Q., M. Kasuga, Y. Sakuma, H. Abe, S. Miura, K. Yamaguchi-Shinozaki, and K. Shinozaki. 1998. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10:1391-1406. Lizotte, M.P., and J.C. Priscu. 1992. Spectral irradiance and big-optical properties in peren- nially ice-covered lakes of the dry valleys (McMurdo Sound, Antarctica). Antarctic Research Series 57:1-14. Logsdon, J.M., Jr., and W.F. Doolittle. 1997. Origin of antifreeze protein genes: A cool tale in molecular evolution. Proceedings of the National Academy of Sciences USA 94:3485- 3487. Lonhienne, T., J. Zoidakis, C. E. Vorgias, G. Feller, C. Gerday, and V. Bouriotis. 2001. Modular structure, local flexibility and colc-activity of a novel chitobiase from a psychrophilic Antarctic bacterium. Journal of Molecular Biology 310:291-297. Lubin, D., J.E. Frederick, C.R. Booth, T. Lucas, and D. Neuschuler. 1989. The ultraviolet radiation environment of Antarctica: McMurdo Station during September-October 1987. Geophysical Research Letters 16:783-785. Malin, M.C., and M.H. Carr. 1999. Groundwater formation of martian valleys. Nature 397:589-591. Malloy, K.D., M.A. Holman, D. Mitchell, and H.W. Detrich III. 1997. Solar UVB-induced DNA damage and photoenzymatic repair in antarctic zooplankton. Proceedings of the National Academy of Sciences USA 94:1258-1263.

REFERENCES 145 Marchant, H.J., A.T. Davidson, and G.J. Kelly. 1991. UV-B protecting compounds in the marine alga Phaeocystis pouchetii from Antarctica. Marine Biology 109:391-395. Marchant, D.R., C.C. Swisher III, D.R. Lux, D.P. West, Jr., and G.H. Denton. 1993. Pliocene paleoclimate and East Antarctic ice-sheet history from durficial ash deposits. Science 260:667-670. Marsh, A.G., R.E. Maxon, Jr., and D.T. Manahan 2001. High macromolecular synthesis with low metabolic cost in Antarctic sea urchin embryos. Science 291:1950-1952. Martens, K. 1997. Speciation in ancient lakes. Trends in Ecology and Evolution 12:177-182. Martinez, J.G., and F.R. Valera. 2000. Microdiversity of uncultured marine prokaryotes: The SARll cluster and the marine Archaea of Group I. Molecular Ecology 9:935-948. Masri, S., H. Rast, T. Ripley, D. James, M. Green, X Jia, and R.H. Devlin. 2002. Detection of genetically modified coho salmon using polylerase chain reaction (PCR) amplification. Journal of Agricultural and Food Chemistry 50:3161-3164. Massana, R., L.T. Taylor, A.E. Murray, K.Y. Wu, W.H. Jeffrey, and E.F. DeLong. 1998. Verti- cal distribution and temporal variation of marine planktonic archaea in the Gerlache Strait, Antarctica, during early spring. Limnology and Oceanography 43:607-617. Maxwell, D.P., S. Falk, C.G. Trick, and N.P.A. Huner. 1994. Growth at low temperature mimics high-light acclimation in Chlorella vulgaris. Plant Physiology 105:535-543. Maxwell, D.P., S. Falk, and N.P.A. Huner. 1995. Photosystem II excitation pressure and development of resistance to photoinhibition. I. Light harvesting complex II abun- dance and zeaxanthin content in Chlorella vulgaris. Plant Physiology 107:687-694. McCune, A.R. 1997. How fast is speciation? Molecular, geological, and phylogenetic evidence from adaptive radiation of fishes. Pp. 585-610 in T.J. Givnish and K.J. Sytsma (eds.), Molecular Evolution and Adaptive Radiation. United Kingdom: Cambridge Uni- versity Press. McGowan, K. 2002a. Alternative sequencing technologies. GenomeWeb, 1 October 2002. Available at <http://www.genomeweb.com>. Accessed November 3, 2002. McGowan, K. 2002b. For TIGR and Venter, the goal now is to sequence entire ecosystems at a time. GenomeWeb, 22 July 2002. Available at www.genomeweb.com. Accessed October 30, 2002. McKay, C.P. 2001. The deep biosphere: Lessons for planetary exploration. Pp. 315-327 in J.K. Fredrickson and M. Fletcher (eds.), Subsurface Microbiology and Biogeochemistry. New York: Wiley-Liss, Inc. McKay, C.P., and C.R. Stoker. 1989. The early environment and its evolution on Mars: Implications for life. Reviews of Geophysics 27:189-214. McKay, D.S., E.K. Gibson, K.L. Thomas-Keptra, H. Vali, S. Romanek, S.J. Clemett, X.D.F. Chillier, C.R. Maechling, and N. Zare. 1996. Search for past life on Mars: Possible relic biogenic activity in Martian meteorite ALH84001. Science 273:924-930. Meador, J., W.H. Jeffrey, J.P. Kase, J.D. Pakulski, S. Chiarello, and D.L. Mitchell. 2002. Sea- sonal fluctuation of DNA photodamage in marine plankton assemblages at Palmer Station, Antarctica. Journal of Photochemistry and Photobiology 75:266-271. Medlin, L.K., M. Lange, and M.E.M. Baumann. 1994. Genetic differentiation among three colony-forming species of Phaeocystis: Further evidence for the phylogeny of the Prymnesiophyta. Phycologia 33:199-212. Michaelis, W., R. Seifert, K. Nauhaus, T. Treude, V. Thiel, M. Blumenberg, K. Knittel, A. Gieseke, K. Peterknecht, T. Pape, A. Boetius, R. Amann, B.B. J0rgensen, F. Widdel, J. Peckmann, N.V. Pimenov, and M.B. Gulin. 2002. Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science 297:1013-1015. Miller, D.N., J.E. Bryant, E.L. Madsen, and W.C. Ghiorse. 1999. Evaluation and optimiza- tion of DNA extraction and purification procedures for soil and sediment samples. Applied and Environmental Microbiology 65:47154724.

146 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Moisan, T.A., and B.G. Mitchell. 2001. UV absorption by mycosporine-like amino acids in Phaeocystis antaractica Karsten induced by photosynthetically available radiation. Marine Biology 138:217-227. Molina, L.T., and M.J. Molina. 1986. Absolute absorption cross-sections of ozone in the 185- to 350-nm wavelength range. Journal of Geophysical Research and Atmospheres 91:14501-14508. Morgan, R.M., A.G. Ivanov, J.C. Priscu, D. P. Maxwell, and N.P.A. Huner. 1998. Structure and composition of the photochemical apparatus of the Antarctic green alga, Chlamy- domonas subcaudata. Photosynthesis Research 56:303-314. Moritz, R.E., C.M. Blitz, and E.J. Steig. 2002. Dynamics of recent climate changes in the Arctic. Science 207:1497-1502. Mostajir, B., S. Demers, S. de Mora, R.P. Bukata, and J.H. Jerome. 2000. Implications of UV radiation for the food web structure and consequences on the carbon flow. Pp. 311- 320 in S. de Mora, S. Demers and M. Vernet (eds.), The Effects of UV Radiation in the Marine Environment. United Kingdom: Cambridge University Press. Moylan, T.J., and B.D. Sidell. 2000. Concentrations of myoglobin and myoglobin mRNA in heart ventricles from Antarctic fishes. Journal of Experimental Biology 203:1277-1286. Mueller, U.G., and L.L. Wolfenbarger. 1999. ALFP genotyping and fingerprinting. Trends in Ecology and Evolution 14:389-394. Mullis, K.B., and F.A. Faloona. 1987. Specific synthesis of DNA in vitro via a polymerase catalyzed chain reaction. Methods in Enzymology 155:335-350. Murray, A.E., C.M. Preston, R. Massana, L.T. Taylor, A. Blakis, K.Y. Wu, and E.F. DeLong. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Applied and Environmental Microbiology 64:2585-2595. Murray, A.E., K.Y. Wu, C.L. Moyer, D.M. Karl, and E.F. DeLong. 1999. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean. Aquatic Micro- bial Ecology 18:263-273. Murry, R.E., K. E. Cooksey, and J.C. Priscu. 1986. Stimulation of bacterial DNA synthesis by algal exudates in an attached algal-bacterial consortium. Applied and Environmental Microbiology 52:1177-1182. Nadeau, T.-L., and R.W. Castenholz. 2000. Characterization of psychrophilic oscillatorians (cyanobacteria) from Antarctic meltwater ponds. Journal of Phycology 36:914-923. Nadeau, T.L., E.C. Milbrandt, and R.W. Castenholz. 2001. Evolutionary relationships of cultivated Antarctic oscillatorians (Cyanobacteria). Journal of Phycology 37:650-654. Narinx, E., E. Baise, and C. Gerday. 1997. Subtilisin from psychrophilic Antarctic bacteria: Characterization and site-directed mutagenesis of residues possibly involved in the adaptation to cold. Protein Engineering 10:1271-1279. Nasevicius, A., and C.S. Ekker. 2000. Effective targeted gene "knockdown" in zebrafish. Nature Genetics 26:216-220. NRC (National Research Council). 1991. Opportunities and Priorities in Arctic Geoscience. Washington, DC: National Academy Press. NRC. 1999. Our Common Journey: A Transition Towards Sustainability. National Academy Press, Washington DC NRC. 2001. Grand Challenges in Environmental Sciences. National Academy Press, Washing- ton, DC. NRC. 2002. Abrupt Climate Change: Inevitable Surprises. Washington, DC: National Acad- emy Press. NSB (National Science Board). 2000. Environmental Science and Engineering for the 21st Cen- tury: The Role of the National Science Foundation. National Science Foundation, Arling- ton, Virginia.

REFERENCES 147 NSF (National Science Foundation). 2000. Ecological Genomics: The Application of Genomic Sciences to Understanding the Structure and Function of Marine Ecosystems. Report of a Workshop on Marine Microbial Genomics to Develop Recommendations for the National Science Foundation, held April 19-20, 2000. Arlington, Virginia: National Science Foundation. NSF ACERE (National Science Foundation Advisory Committee for Environmental Research and Education). 2003. Complex Environmental Systems: Synthesis for Earth, Life, and Society in the 21st Century. A 10-Year Outlook for the National Science Foundation. National Science Foundation, Washington, DC. Neale, P.J., and J.C. Priscu. 1995. The photosynthetic apparatus of phytoplankton from an ice-covered Antarctic lake: Acclimation to an extreme shade environment. Plant and Cell Physiology 36:253-263. Neale, P.J., and J.C. Priscu. 1998. Fluorescence quenching in phytoplankton of the McMurdo dry valley lakes (Antarctica): Implications for the structure and function of the photosynthetic apparatus. Vol. 72, pp. 241-254 in J.C. Priscu ted.), Ecosystem Dynamics in a Polar Desert, The McMurdo Dry Valley, Antarctica. Washington, DC: American Geophysical Union. Neale, P.J., J.J. Cullen, and R.F. Davis. 1998. Inhibition of marine photosynthesis by ultra- violet radiation: Variable sensitivity of phytoplankton in the Wedell-Scotia Confluence during the austral spring. Limnology and Oceanography 43:443448. Neale, P.J., J.J. Fritz, and Richard F. Davis. 2001. Effects of UV on photosynthesis of Antarctic phytoplankton: Models and their application to coastal and pelagic assem- blages. Revista Chilena de Historia Natural 74:283-292. Neff, J.C., A.R. Townsend, G. Gleixner, S.J. Lehman, J. Turnbull, and W.D. Bowman. 2002. Variable effects of nitrogen addition on stability of carbon. Nature 419:915-917. Nelson, D.M., D.J. Demaster, R.B. Dunbar, and W.O. Smith, Jr. 1996. Cycling of organic carbon and biogenic silica in the Southern Ocean: Estimates of water-column and sedi- mentary fluxes on the Ross Sea continental shelf. Journal of Geophysical Research 101c:18519-18532. Nelson, K.E., R.A. Clayton, S.R. Gill, M.L. Gwinn, R.J. Dodson, D.H. Haft, et al. 1999. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329. Niggemyer, A., S. Spring, E. Stackebrandt, and R.F. Rosenzweig. 2001. Isolation and char- acterization of a novel As(V)-reducing bacterium: Implications for arsenic mobiliza- tion and the genus Desulfitobacterium. Applied and Environmental Microbiology 67:5568- 5580. Olson, J.B., T.F. Steppe, R.W. Litaker, and H.W. Paerl. 1998. N2-fixing microbial consortia associated with the ice cover of Lake Bonney, Antarctica. Microbial Ecology 36:231-238. Olson, R.J., H.M. Sosik, A.M. Chekalyuk, and A. Shalapyonok. 2000. Effects of iron enrich- ment on phytoplankton in the Southern Ocean during late summer: Active fluores- cence and flow cytometric analyses. Deep-Sea Research II 47:3179-3200. Omelyansky, V. 1911. Bacteriological investigation of Sanga mammoth and nearby soil. Arkhiv BiologicheskiLh Nauk 16:335-340. Oremland, R.S., S.E. Hoeft, N. Bano, R.A. Hollibaugh, and J.T. Hollibaugh. 2002. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative chemoautotroph, strain MLHE-1. Applied and Environmental Microbiology 68:4795-4802. Orton, G.S., J.R. Spencer, L.D. Travis, T.Z. Martin, and L.K. Tamppari. 1996. Galileo photo- polarimeter-radiometer observations of Jupiter and the Galilean satellites. Science 274:389-391. Ostertag, E.M., and H.H. Kazazian, Jr. 2001. Biology of mammalian L1 retrotransposons. Annual Review of Genetics 35:501-538.

148 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Ouverney, C.C., and J.A. Fuhrman. 2000. Marine planktonic Archaea take up amino acids. Applied and Environmental Microbiology 66:48294833. Paabo, S. 1989. Ancient DNA: Extraction, characterization, molecular cloning and enzy- matic amplification. Proceedings of the National Academy of Sciences USA 86:1939-1943. Paerl, H.W., and J.C. Priscu. 1998. Microbial phototrophic, heterotrophic and diazotrophic activities associated with aggregates in the permanent ice cover of Lake Bonney, Antarctica. Applied Microbial Ecology 36:221-230. Pakker, H., R.S. T. Martins, P. Boelen, and A.G.J. Buma. 2000. Effects of temperature on the photoreactivation of ultraviolet-B-induced DNA damage in Palmaria palmata (Rhodophyta). Journal of Phycology 36:334-341. Pakulski, J.D., S. Durkin, J. Kase, J. Meador, K. McClery, and W.H. Jeffrey. In preparation. Responses of Antractic heterotrophic bacteria to seasonal changes in solar irradiance. Park, W., P. Padmanabhan, S. Padmanabhan, G.J. Zylstra, and E.L. Madsen. 2002. nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene- degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology 148:2319-2329. Parker, S.K., and H. W. Detrich, III. 1998. Evolution, organization, and expression of oc- tubulin genes in the Antarctic fish Notothenia coriiceps: Adaptive expansion of a gene family by recent gene duplication, inversion, and divergence. Journal of Biological Chem- istry 273:34358-34369. Patarnello, T., L. Bargelloni, V. Varotto, and B. Battaglia. 1996. Krill evolution and the Antarctic ocean currents: Evidence of vicariant speciation as inferred by molecular data. Marine Biology 126:603-608. PCAST (President's Committee of Advisers on Science and Technology). 1998. Teaming with Life: Investing in Science to Understand and Use America's Living Capital. Office of Science and Technology Policy, Washington, DC. Pennisi, E. 2002. Recharged field's rallying cry: Gene chips for all organisms. Science 297:1985-1986. Perna, N.T., G. Plunkett, V. Burland, B. Mau, J.D. Glasner, D.J. Rose, G.F. Mayhew, P.S. Evans, J. Gregor, H.A. Kirkpatrick, G. Posfai, J. Hackett, S. Klink, A. Boutin,Y. Shao, L. Miller, E.J. Grotbeck, N.W. Davis, A. Lim, E.T. Dimalanta, K.D. Potamousis, J. Apodaca, T.S. Anantharaman, J. Lin, G. Yen, D.C. Schwartz, R.A. Welch, and F.R. Blattner. 2001. Genome sequence of enterohemmorrhagic Escherichia cold 0157:H7. Nature 409:529- 533. Peterson, D., and C. Howard-Williams (eds.~. 2000. The Latitudinal Gradient Project. Antarc- tica New Zealand, special publication. Christchurch, New Zealand: International Antarctic Centre. Petit, J.-R., J. Jouzel, D. Raynaud, N. I. Barkov, J. M. Barnola, I. Basile, M. Benders, J. Chappellaz, M. Davis, G. Delaygue, M. Delmotte, V. M. Dotlyakov, M. Legrand, V. Y. Lipendoc, C. Lorius, L. Pepin, C. Ritz, E. Saltzman, and M. Stievenard. 1999. Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica. Nature 399:429436. Phelps, T.J., A.V. Palumbo, and A.S. Beliaev. 2002. Metabolomics and microarrays for improved understanding of phenotypic characteristics controlled by both genomics and environmental constraints. Current Opinion in Biotechnology 13:20-24. Portner, H.-O. 2002. Climate variations and the physiological basis of temperature depen- dent biogeography: system to molecular hierarchy of thermal tolerance in animals. Comparative Biochemistry and Physiology A 132:739-761. Prezelin, B.B., N.P. Boucher, and R.C. Smith. 1994. Marine primary production under the influence of the Antarctic ozone hole: Icecolors '90. Antarctic Research Series 62:159- 186.

REFERENCES 149 Prezelin, B.B., M.A. Moline, and H.A. Matlick. 1998. Icecolors '93: Spectral UV radiation effects on Antarctic frazil ice algae. Antarctic Research Series 73:45-83. Price, B.P. 2000. A habitat for psychrophiles in deep Antarctic ice. Proceedings of the National Academy of Sciences USA 97:1247-1251. Priscu, J.C., and B. Christner. In Press. Earth's icy biosphere. In A.T. Bull ted.), Microbial Diversity and Prospecting. American Society of Microbiology. Priscu, J.C., C.H. Fritsen, E.E. Adams, S.J. Giovannoni, H.W. Paerl, C.P. McKay, P.T. Doran, D.A. Gordon, B.D. Lanoil, and J.L. Pinckney. 1998. Perennial Antarctic lake ice: An oasis for life in a polar desert. Science 280:2095-2098. Priscu, J.C., E.E. Adams, W.B. Lyons, M.A. Voytek, D.W. Mogk, R.L. Brown, C.P. McKay, C . D. Takacs, K. A. Welch, C . F. Wolf, J. D. Kirstein, and R. Avci. 1 999a. Geomicrobiology of sub-glacial ice above Vostok Station. Science 286:2141-2144. Priscu, J.C., C.F. Wolf, C.D. Takacs, C.H. Fritsen, J. Laybourn-Parry, E.C. Roberts, and W.B. Lyons. l999b. Carbon transformations in the water column of a perennially ice- covered Antarctic Lake. Bioscience 49:997-1008. Priscu, J.C., C.H. Fritsen, E.E. Adams, H.W. Paerl, J.T. Lisle, J.E. Dore, C.F. Wolf, and J. Milucki. In press. Perennial Antarctic lake ice: A refuge for cyanobacteria in an extreme environment. In S.O. Rogers and J. Castello (eds.), Life in Ancient Ice. New Jersey: Princeton University Press. Purkhold, U. , A. Pommerening-Roser, S. Juretschko, M. C . Schmid, H. -P. Koops, and M. Wagner. 2000. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diver- sity surveys. Applied and Environmental Microbiology 66:5368-5382. Radajewski S., P. Ineson, N.R. Parekh, and J.C. Murrell. 2000. Stable-isotope probing as a tool in microbial ecology. Nature 403:646-649. Ranjard L., F. Poly, and S. Nazaret. 2000. Monitoring complex bacterial communities using culture-independent molecular techniques: Application to soil environment. Research in Microbiology 151:167-177. Rappe, M.S., S.A. Connon, K.L. Vergin, and S.J. Giovannoni. 2002. Cultivation of the ubiquitous SARll marine bacterioplankton clade. Nature 418:630-633. Raymo, M.E., K. Ganley, S. Carter, D.W. Oppo, and J. McManus. 1998. Millennial-scale climate instability during the early Pleistocene epoch. Nature 392:699-702. Raymond, J.A. 1993. Glycerol and water balance in a near-isosmotic teleost, winter- acclimatized rainbow smelt. Canadian Journal of Zoology 71:1849-1854. Renger, G., and U. Schreiber. 1986. Practical applications of fluorometric methods to algae and higher plant research. In: Light Emission by Plants and Bacteria. London: Academic Press. Riddle, D., T. Blumethal., B. Meyer, and J. Preiss. 1997. C. elegans II. New York: Cold Springs Harbor Laboratory Press. Riegger, L., and D. Robinson. 1997. Photoinduction of UV-absorbing compounds in Antarctic diatoms and Phaeocystis antarctica. Marine Ecology Progress Series 160:13-25. Ritchie, P.A., L. Bargelloni, A. Meyer, J. A. Taylor, J. A. Macdonald, and D. A. Lambert. 1996. Mitochondrial phylogeny of trematomid fishes (Nototheniidae, Perciformes) and the evolution of Antarctic fish. Molecular Phylogenetics and Evolution 5:383-390. Robinson, C.H. 2002. Controls on decomposition and soil nitrogen availability at high lati- tudes. Plant Soil 242:65-81. Robinson, C.H., P.A. Wookey, A.N. Parsons, J.A. Potter, T.V. Callaghan, J.A. Lee, M.C. Press, and J.M. Welker. 1995. The response of plant litter decomposition and nitrogen mineralisation to simulated environmental change in a high Arctic polar semi dessert and subarctic dwarf shrub heath. Oikos 74:503-512.

150 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Rogers, S.O., W.T. Starmer, and J.D. Castello. In press. Recycling of organisms and genomes. In J. Castello and S. Rogers teds.), Life in Ancient Ice. Princeton Press. Rogers, S.O., and M.A.M. Rogers. 1999. Gene flow in fungi. Pp. 97-121 in J.J. Worrall ted.), Structure and Dynamics of Fungal Populations. Kluwer Academic Publishers, Boston. Rondon, M. R. , P. .R. August, A .D. Bettermann, S. F. Brady, T. H. Grossman, M. R. Liles, K. A. Loiacono, B. . A. Lynch, I. A. MacNeil, M. S. Osburne, J . Clardy, J. Handelsman, and R. M. Goodman. 2000. Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms. Applied and Environmental Microbiology 66:2541-2547. Rontein, D., G. Basset, and A.D. Hanson. 2002. Metabolic engineering of osmoprotectant accumulation in plants. Metabolic Engineering 4:49-56. Saliki, J.T., E.J. Cooper, and J.P. Gustavson. 2002. Emerging morbillivirus infections of marine mammals: Development of two diagnostic approaches. Annals of the New York Academy of Sciences 969:51-59. Sanford, E. 1999. Regulation of keystone predation by small changes in ocean tempera- tures. Science 283:2095-2097. Sanger, F., S. Nicklen, and A.R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences USA 74:5463-5467. SCAR (Scientific Community on Antarctic Research). 2001. Report of the Subglacial Antarctic Lake Exploration Group of Specialists (SALEGOS). Meeting I, Bologna, Italy, 29-30 November 2001. University of California, Santa Cruz. Scherer, R. 2002. Sustained sea-ice free conditions in the Antarctic nearshore zone during marine isotope stage 31 (1.07 Ma). Abstract presented at American Geophysical Union's Annual Meeting, held December 5-10, 2002, San Francisco, California. Paper No. 73-14. Schimel, J.P. 1995. Plant transport and methane production as controls on methane flux from Arctic wet meadow tundra. Biogeochemistry 28:183-200. Schimel, J.P., and J.S. Clein. 1996. Microbial response to freeze-thaw cycles in tundra and taiga soils. Soil Biology and Biochemistry 28:1061-1066. Schloss, P. D. , L.R. Williamson, J . P. Kearns, J. F. Banfield, R.W. Ruess, W. D. Metcalf, and J. Handelsman. 2002. Alaskan soils: A cold microbial observatory. P. 68 in Moran, M.A., and S.L. Cadee (eds.), Microbial Observatories/LexEn Principal Investigators' Workshop. Arlington, Virginia: National Science Foundation. Schoeberl, M.R., and D.L. Hartmann. 1991. The dynamics of the stratospheric polar vortex and its relation to springtime ozone depletions. Science 251:46-52. Schreiber, U., W. Bilger, and C. Neubauer. 1994. Chlorophyll fluorescence as a non-intrusive indicator for rapid assessment of in vivo photosynthesis. In: Schulze ED, Caldwell MM (eds.), Ecophysiology of Photosynthesis. Berlin: Springer-Verlag. Seaburg, K.G., B.C. Parker, R.A. Wharton, and G.M. Simmons, Jr. 1981. Temperature- growth responses of algal isolates from Antarctic oases. Journal of Phycology 17:353- 360. Serrano, R. , J. M. Mulet, F. Rios, J. A. Marquez, I. F. de Larrinoa, M .P . Leube, I. Mendizabal, M. Pascual-Ahuir, M. Proft, R. Ros, and C. Montesinos. 1999. A glimpse of the mecha- nisms of ion homeostasis during salt stress. Journal of Experimental Botany 50:1023- 1036. Severinghaus, J.P., T. Sowers, E.J. Brook, R.B. Alley, and M.L. Benders. 1998. Timing of abrupt climate change at the end of the Younger Dryas interval from thermally frac- tionated gases in polar ice. Nature 391:141-146.

REFERENCES 151 Shackleton, N.J., J. Backman, H. Zimmerman, D.V. Kent, M.A. Hall, D.G. Roberts, D. Schnitker, J.G. Baldauf, A. Desprairies, R. Homrighausen, P. Huddlestun, J.B. Keene, A.J. Kaltenback, K. A. O. Krumsiek, A. C . Morton, J .W. Murray, and J . Westberg-Smith. 1984. Oxygen isotope calibration of the onset of ice-rafting and history of glaciation in the North Atlantic region. Nature 307:620-623. Shinozaki, K., and K. Yamaguchi-Shinozaki. 2000. Molecular responses to dehydration and low temperature: Differences and cross-talk between stress signaling pathways. Current Opinion in Plant Biology 3:217-223. Sidell, B.D., M.E. Vayda, D.J. Small, T.J. Moylan, R.L. Londravile, M.L. Yuan, K.J. Rodnick, Z.A. Eppley, and L. Costello. 1997. Variable expression of myoglobin among the hemoglobinless Antarctic icefishes. Proceedings of the National Academy of Sciences USA 94:3420-3424. Siegert, M.J., J.C. Ellis-Evans, M. Tranter, C. Mayer, J.-R. Petit, A. Salamatin, and J.C. Priscu. 2001. Physical, chemical and biological processes in Lake Vostok and other Antarctic subglacial lakes. Nature 414:603-609. Siegert, M.J., M. Tranter, J.C. Ellis-Evans, J.C. Priscu, and W. Berry Lyons. In press. The hydrochemistry of Lake Vostok and the potential for life in Antarctic subglacial lakes. Hydrological Processes. Small, J., S.R. Call, F.J. Brockman, T.M. Straub and D.P. Chandler. 2001. Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Applied and Environ- mental Microbiology 67:4708-4716. Smith, R.C., and K.S. Baker. 1979. Penetration of UV-band biologically effective dose rates in natural waters. Journal of Photochemistry and Photobiology 29:311-323. Smith, W.O., Jr., and G.R. DiTullio. 1995. Relationship between dimethylsulfide and phyto- plankton pigment concentrations in the Ross Sea, Antarctica. Deep Sea Research Part I 45:873-892. Smith, R.C., B.B. Prezelin, K.S. Baker, R.R. Bidigare, N.P. Boucher, T. Coley, D. Karentz, S. MacIntyre, H.A. Matlick, D. Menzies, M. Ondrusek, Z. Wan, and K.J. Waters. 1992. Ozone depletion: Ultraviolet radiation and phytoplankton biology in Antarctic waters. Science 255:952-959. Smith, R., L.C. Stapleford, and R.S. Ridings. 1994. The acclimated response of growth, photosynthesis, composition, and carbon balance to temperature in the psychrophilic ice diatom Nitzschia seriata. Journal of Phycology 30:8-16. Smith, W.O., Jr., L.A. Codispoti, D.M. Nelson, T. Manley, E.J. Buskey, H.J. Niebauer, and G.F. Cota. 1991. Importance of Phaeocystis blooms in the high-latitude ocean carbon cycle. Nature 352:514-516. Smith, W.O., Jr., J. Marra, M.R. Hiscock and R.T. Barber. 2000. The seasonal cycle of phyto- plankton biomass and primary productivity in the Ross Sea, Antarctica. Deep-Sea Research 47:3119-3140. Solomon, S. 1990. Progress towards a quantitative understanding of Antarctic ozone deple- tion. Nature 347:347-354. Somero, G.N. In press. Thermal physiology and vertical zonation of intertidal animals: Optima, limits, and costs of living. American Zoologist. Somero, G.N., and A.L. DeVries. 1967. Temperature tolerance of some Antarctic fish. Science 156:257-258. Sowers, T. 2001. The N2O record spanning the penultimate deglaciation from the Vostok ice core. Journal of Geophysical Research 106:31, 903-914. Spilliaert, R., and A. Gudmundsdottir. 1999. Atlantic cod trypsin Y - Member of a novel trypsin group. Marine Biotechnology 1:598-607. Stahl, D.A., and J.M. Tiedje. 2002. Microbial ecology and genomics: A crossroads of oppor- tunity. American Academy of Microbiology, Washington, D.C.

52 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Staley, J.T., R.L. Irgens, and R.P. Herwig. 1989. Gas vacuolate bacteria from the sea ice of Antarctica. Applied and Environmental Microbiology 55:1033-1036. Stein, J.L., T.L. Marsh, K.E. Wu, H. Shizuya, and E.F. DeLong. 1996. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome frag- ment from a planktonic marine Archaeon. Journal of Bacteriology 178:591-599. Steponkus, P.L., M. Uemura, R.A. Joseph, S.J. Gilmour, and M.F. Thomashow. 1998. Mode of action of the COR15a gene on the freezing tolerance of Arabidopsis thaliana. Proceed- ings of the National Academy of Science USA 95:14,570-14,575. Stockinger, E.J., S.J. Gilmour, and M.F. Thomashow.1997. Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA. Proceedings of the National Academy of Sciences USA 95:14570-14575. Stolz, J.F., and R.S. Oremland. 1999. Bacterial respiration of arsenic and selenium. FEMS Microbiology Reviews 23:615-627. Sunda, W., D.J. Kieber, R.P. Kiene, and S. Huntsman. 2002. An antioxidant function for DMSP and DMS in marine algae. Nature 418:317-320. Suzuki, I., D.A. Los, Y. Kanesaki, K. Mikami, and N. Murata. 2000. The pathway for perception and transduction of low-temperature signals in Synechocystis. EMBO Jour- nal 19:1327-1334. Symer, D.E., C. Connelly, S.T. Szak, E.M. Caputo, G.J. Cost, G. Parmigiani, and J.D. Boeke. 2002. Human L1 retrotransposition is associated with genetic stability in vivo. Cell 110:327-338. Tan, Z., T. Hurek, P. Vinuesa, P. Muller, J.K. Ladha, and B. Reinhold-Hurek. 2001. Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza saliva) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR. Applied and Environ- mental Microbiology 67:3655-3664. Tang, E.P.Y., R.Tremblay, and W.F. Vincent. 1997a. Cyanobacterial dominance of polar freshwater ecosystems: Are high-latitude mat-formers adapted to low temperature? Journal of Applied Phycology 33:171-181. Tang, E.P.Y., W.F. Vincent, D. Proulx, P. Lessard, and J. de la Noue. 1997b. Polar cyano- bacteria versus green algae for tertiary waste-water treatment in cool climates. Journal of Applied Phycology 9:371-381. Taylor, K. C., C.U. Hammer, R.B . Alley, H. B. . Clausen, D. Dahl-Jensen, A.J. Gow, N.S. Gundestrup, J. Kipfstuhl, J.C. Moore, and E.D. Waddington. 1993. Electrical conduc- tivity measurements from the GISP2 and GRIP Greenland ice cores. Nature 366:549- 552. Thomas, D.N., and G.S. Dieckmann. 2002. Antarctic sea ice a habitat for extremophiles. Science 295:641-644. Thomas-Keptra, K. L., S. J. Clemett, D.A Bazylinski, J.L. Kirschvink, D.S. McKay, S.J. Wentworth, H. Valli, E.K. Gibson, Jr., and C.S. Romanek. 2002. Magnetofossils from ancient Mars: A robust biosignature in the martian meteorite ALH84001. Applied and Environmental Microbiology 68:3663-3672. Thomashow, M.F. 2001. So what's new in the field of plant cold acclimation? Lots! Plant Physiolology 125:89-93. Torsvik V., and L. Ovreas. 2002. Microbial diversity and function in soil: From genes to ecosystems. Current Opinion in Microbiology 5:240-245. Treonis, A.M., D.H. Wall, and R.A. Virginia. 2000. The use of anhydrobiosis by soil nema- todes in the Antarctic Dry Valleys. Functional Ecology 14:460467. Turner, J., J.C. King, T.A. Lachlan-Cope, and P.D. Jones. 2001. Recent temperature trends in the Antarctic. Nature 418:291-292. Turner, J. J.C. King, T.A. Lachlan-Cope, and P.D. Jones. 2002. Climate change (Communica- tion arising): Recent temperature trends in the Antarctic. Nature 418:291-292.

REFERENCES 153 Turtle, E.P., and E. Pierazzo. 2001. Thickness of a Europan ice shell from impact crater simulations. Science 294:1326-1328. Urbach, E., K.L. Vergin, and S.J. Giovannoni. 1999. Immunochemical detection and isola- tion of DNA from metabolically active bacteria. Applied and Environmental Microbiology 65:1207-1213. Vaulot, D., J.-L. Birrien, D. Marie, R. Casotti, M.J.W. Veldhuis, G. Kraay, and M.-J. Chretiennot-Dinet. 1994. Morphology, ploidy, pigment composition and genome size of cultured strains of Phaeocystis (Prymnesiophyceae). Journal of Phycology 30:1022- 1035. van Tienderen, P.H., A.A. de Haan, C.G. van der Linden, and B. Vosman. In press. Biodiversity assessment using markers for ecologically important traits. Trends in Ecology and Evolution. Venter, J.C., M.D. Adams, E.W. Meyers, P.W. Li, R.J. Mural, G.G. Sutton, et al. 2001. The sequence of the human genome. Science 291:1304-1351. Vernet, M. 2001. Effects of UV radiation on the physiology and ecology of marine phyto- plankton. Pp. 237-278 in S. de Mora, S. Demers and M. Vernet (eds.), The Effects of UV Radiation in the Marine Environment. Cambridge University Press, Cambridge. Vezina, S., and W.F. Vincent. 1997. Arctic cyanobacteria and limnological properties of their environment: Bylot Island, Northwest Territories, Canada (73°N, 80°W). Polar Biology 17:523-534. Vincent, W.F., and M.R. James. 1996. Biodiversity in extreme aquatic environments: lakes, ponds and streams of the Ross Sea sector, Antarctica. Biodiversity Conservation 5:1451- 1472. Vincent, W.F., and P.J. Neale. 2000. Mechanisms of UV damage to aquatic organisms, Pp. 149-176 in S.J. de Mora, S. Demers, and M. Vernet (eds.), The Effects of UV Radiation on Marine Ecosystems. Environmental Chemistry Series. Cambridge University Press, UK. Vincent, W.F., R.W. Castenholz, M.T. Downes, and C. Howard-Williams. 1993. Antarctic cyanobacteria: Light, nutrients, and photosynthesis in the microbial mat environment. Journal of Phycology 29:745-755. Vinnikov, K.Y., A. Robock, R.J. Stouffer, J.E. Walsh, C.L. Parkinson, D.J. Cavalieri, J.F.B. Mitchell, D. Garrett, and V.F. Zakharov. 1999. Global warming and Northern Hemi- sphere sea ice extent. Science 286:1934-1937. Vishnivetskaya, T., S. Kathariou, J. McGrath, D. Gilichinsky, and J.M. Teidge. 2000. Low- temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments. Extremophiles 4:165-173. Visser, I.K., M.F. van Bressem, M.W. van de Bildt, J. Groen, C. Orvell, J.A. Raga, and A.D. Osterhaus. 1993. Prevalence of morbilliviruses among pinniped and cetacean species. Reviews in Science and Technology 12:197-202. Vorobyova, E., C. Soina, M. Gorlenko, N. Minkovskaya, N. Aalinova, D. Gilichinsky, E. Rivkina, and T. Vishnivetskaya. 1997. The deep cold biosphere: Facts and hypothesis. FEMS Microbiology Review 20:277-291. Walsby, A.E. 1994. Gas vesicles. Microbiological Reviews 58:94-144. Walter, M.A., D.J. Spillett, P. Thomas, and P.N. Goodfellow. 1994. A method for construct- ing radiation hybrid maps of whole genomes. Nature Genetics 7:22-28. Wayne, R.K, J.A. Leonard, and A. Cooper. 1999. Full of sound and fury: The recent history of ancient DNA. Annual Review in Ecology and Systematics 30:457477. Weber, M.H.W., and M.A. Marahiel. 2002. Coping with the cold: The cold shock response in the Gram-positive soil bacterium Bacillus subtilis. Philosophical Transactions of the Royal Society London B 357:895-907. Weckwerth, W., and O. Fiehn. 2002. Can we discover novel pathways using metabolomic analysis? Current Opinion in Biotechnology 13:156-160.

154 FRONTIERS IN POLAR BIOLOGY IN THE GENOMIC ERA Weller, C.S., and P.A. Penhale teds.) 1994. Ultraviolet radiation in Antarctica: Measurements and Biological Effects. Antarctic Research Series Vol. 62. American Geophysical Union, Washington, DC. Welsh, D.W., Y. Ishida, and K. Nagasawa. 1998. Thermal limits and ocean migrations of sockeye salmon (Oncorhynchus nerka): Long-term consequences of global warming. Canadian Journal of Fisheries and Aquatic Sciences 55:937-948. Wharton, D.A., and M.R. Worland. 1998. Ice nucleation activity in the freezing-tolerant Antarctic nematode, Panagrolaimus davidi. Cryobiology 36:279-286. Wharton, R.A., Jr., R.A. Jamison, M. Crosby, C.P. McKay, and J.W. Rice, Jr. 1995. Paleolakes on Mars. Journal of Paleolimnology 13:267-283. Wheeler, P.A. 1997. Preface: The 1994 Arctic Ocean section. Deep-Sea Research Part II-Topical Studies In Oceanography 44:1483-1485. Whyte, L.G., C.W. Greer, and W.E. Inniss. 1996. Assessment of the biodegradation poten- tial of psychrotrophic microorganisms. Canadian Journal of Microbiology 42:99-106. Willerslev, E., A.J. Hansen, and H.N. Poinar. In press. Experimental considerations on the recovery of DNA/RNA and viable organisms from ancient ice and permafrost. In J. Castello and S. Rogers (eds.), Life in Ancient Ice. Princeton Press. Wu, L., D.K. Thompson, G. Li, R.A. Hurt, J.M. Tiedje, and J. Zhou. 2001. Development and evaluation of functional gene arrays for detection of selected genes in the environ- ment. Applied and Environmental Microbiology 67:5780-5790. Yamanaka, K. 1999. Cold shock response in Escherichia coli. Journal of Molecular Microbiology and Biotechnology 1:193-202. Yang, H., E. Golenberg, and J. Shoshani. 1996. Phylogenetic resolution within the Elephantidae using fossil DNA sequence from the American mastodon (Mammut americanum) as an outgroup. Proceedings of the National Academy of Sciences USA 93:1190-1194. Yayanos, A.A. 1986. Evolutional and ecological implications of the properties of deep-sea baraphilic bacteria. Proceedings of the National Academy of Sciences USA 83:9542-9546. Yin, B., D. Crowley, G. Sparovek, W.J. de Melo, and J. Borneman. 2000. Bacterial functional redundancy along a soil reclamation gradient. Applied and Environmental Microbiology 66:43614365. Yu, Z., G.R. Stewart, and W.W. Mohn. 2000. Apparent contradiction: Psychrotolerant bacteria from hydrocarbon-contaminated Arctic tundra soils that degrade diterpenoids synthesized by trees. Applied and Environmental Microbiology 66:5148-5154. Zachos, J., M. Pagani, L. Sloan, and E. Thomas. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292:686-693. Zecchinon, L., P. Claverie, T. Collins, S. D'Amico, D. Delille, G. Feller, D. Georlette, E. Gratia, A. Hoyoux, M. A. Meuwis, G. Sonan, and C. Gerday. 2001. Did psychrophilic enzymes really win the challenge? Extremophiles 5:313-321. Zehr, J.P., M.T. Mellon, and S. Zani. 1998. New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of nitrogenase (nifH) genes. Applied and Environ- mental Microbiology 64:3444-3450. Zehr, J.P., J.B. Waterbury, P.J. Turner, J.P. Montoya, E. Omoregie, G.F. Steward, A. Hansen, and D.M. Karl. 2001. Unicellular cyanobacteria fix N-2 in the subtropical North Pacific Ocean. Nature 412:635-638. Zhao, Y., M. Ratnayake-Lecamwasam, S.K. Parker, E. Cocca, L. Camardella, G. di Prisco, and H.W. Detrich III. 1998. The major adult oc-globin gene of Antarctic teleosts and its remnants in the hemoglobinless icefishes: Calibration of the mutational clock for nuclear genes. Journal of Biological Chemistry 273:14745-14752.

REFERENCES 155 Zhou, J.Z., M.E. Davey, J.B. Figueras, E. Rivkina, D. Gilichinsky, and J.M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology UK 143:3913-3919. Zhu, J.-K. 2002. Salt and drought stress signal transduction in plants. Annual Review of Plant Biology 53:247-273.

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As we enter the twenty-first century, the polar biological sciences stand well poised to address numerous important issues, many of which were unrecognized as little as 10 years ago. From the effects of global warming on polar organisms to the potential for life in subglacial Lake Vostok, the opportunities to advance our understanding of polar ecosystems are unprecedented. The era of “genome-enabled” biology is upon us, and new technologies will allow us to examine polar biological questions of unprecedented scope and to do so with extraordinary depth and precision.

Frontiers in Polar Biology in the Genomic Revolution highlights research areas in polar biology that can benefit from genomic technologies and assesses the impediments to the conduct of polar genomic research. It also emphasizes the importance of ancillary technologies to the successful application of genomic technologies to polar studies. It recommends the development of a new initiative in polar genome sciences that emphasizes collaborative multidisciplinary research to facilitate genome analyses of polar organisms and coordinate research efforts.

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