Skip to main content

Life-Cycle Decisions for Biomedical Data The Challenge of Forecasting Costs (2020) / Chapter Skim
Currently Skimming:

Appendix F: Comparison of the Contents Across the Three Data States
Pages 156-160

The Chapter Skim interface presents what we've algorithmically identified as the most significant single chunk of text within every page in the chapter.
Select key terms on the right to highlight them within pages of the chapter.


From page 156...
... F Comparison of the Contents Across the Three Data States Three hypothetical data resources -- one representing each of the three data states described in Chapter 2 -- are described in Box F.1, which provides descriptions of the three hypothetical data states used in tabulated com­ parisons. Table F.1 then describes characteristics of those hypothetical data resources for the purpose of comparison.
Read the entire page →
From page 157...
... Contributors of data are expected to "reconsent" any participant before his or her information is submitted to the repository. The repository applies standard processing pipelines to certain uploaded data, such as generating variant calls from genome sequence data.
Read the entire page →
From page 158...
... Capability Characteristics State 3 (B) Capability Characteristics Passive repository with few capabilities; Supports user annotation, has persistent User annotation is unlikely; data sets users likely extract data from it and identifiers, and provides means to cite not expected to change or be augmented work with it on their own computers.
Read the entire page →
From page 159...
... . Possible dependencies on mostly self-contained, although some may be required to be replicated offsite, external data sets (e.g., gene variant cells of the metadata may be drawn from but data creator responsible for such relative to a reference mouse genome)
Read the entire page →
From page 160...
... Standards, Regulatory, and Governance Concerns Governance Concerns Governance Concerns Relevant standards for some types of data Community standards exist for all the Archive will enforce archive-level (e.g., sequencing data and their analysis main types of sequence-based data hosted; standards for metadata on deposited data products) , but common software tools repository conforms to these.
Read the entire page →

Key Terms

  • sequence data
  • availability characteristics
  • capability characteristics
  • content characteristics
  • control characteristics

  • governance concerns
  • external context
  • external data
  • user annotation
  • space usage

  • repository operators
  • persistent identifiers
  • integrity checks
  • sets deposited
  • variant calls

  • access control
  • mouse genome
  • support requirements
  • reference mouse
  • reviewing data

  • submitted data
  • enforce data
  • data produced
  • operations characteristics
  • user characteristics

  • accept data
  • data processing
  • data distinctiveness
  • collecting data
  • textual data


    • This material may be derived from roughly machine-read images, and so is provided only to facilitate research.
    More information on Chapter Skim is available.