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Next Steps for Functional Genomics Proceedings of a Workshop (2020) / Chapter Skim
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Appendix E: Acronyms and Abbreviations
Pages 185-186

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From page 185...
... Appendix E Acronyms and Abbreviations ATAC-seq assay for transposase-accessible chromatin using sequencing Ca++ calcium ion ChIP-seq chromatin immunoprecipitation sequencing ChRO-seq chromatin run-on and sequencing CITE-seq cellular indexing of transcriptomes and epitopes by sequencing ConA Concanavalin A COX cytochrome c oxidase CRISPR clustered regularly interspaced short palindromic repeats CUT&RUN cleavage under targets and release using nuclease CUT&Tag cleavage under targets and tagmentation CZI Chan Zuckerberg Initiative DGRP Drosophila melanogaster Genetic Reference Panel EDGE Enabling Discovery through GEnomic Tools ENCODE Encyclopedia of DNA Elements eQTL expression quantitative trait locus FGF fibroblast growth factor GFP green fluorescent protein GO gene ontology GTEx Genotype-Tissue Expression 185
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From page 186...
... 186 NEXT STEPS FOR FUNCTIONAL GENOMICS GWAS genome-wide association study GxE genotype-by-environment HCA Human Cell Atlas HTS high-throughput screening IBD inflammatory bowel disease ICDA International Common Disease Alliance ILC innate lymphoid cell LNCRNA long non-coding RNA LPS lipopolysaccharide MAPK mitogen-activated protein kinase MNase micrococcal nuclease mRNA messenger RNA NIH National Institutes of Health NSF National Science Foundation pA-MNASE protein A-micrococcal nuclease pQTL protein quantitative trait locus qPCR quantitative polymerase chain reaction QTL quantitative trait locus RNA-seq RNA-sequencing SHR shortroot shRNA short-hairpin RNA SNP single nucleotide polymorphism SQR sulfide-quinone reductase STARmap spatially-resolved transcript amplicon readout mapping TAD topologically associated domain TF transcription factor UIUC University of Illinois at Urbana-Champaign V1aR vasopressin receptor 1a WT wild-type
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